Rac1/Cdc42 Activation Assay Combo Kit

Catalog No. ABIN2345082

Product Details

Reactivity: Various Species

Application: Activation (Act)

Sample Type: Cell Lysate

Characteristics: Rac1/Cdc42 Activation Assay utilizes PAK PBD Agarose beads to selectively isolate and pull-down the active form of Rac or Cdc42 from purified samples or endogenous lysates. Subsequently, the precipitated GTP-Rac or Cdc42 is detected by western blot analysis using an anti- Rac1 or Cdc42 specific monoclonal antibody (see Figure 3, Figure 5 and Assay Principle). Rac1/Cdc42 Activation Assay Kit provides a simple and fast tool to monitor the activation of Rac1 or Cdc42. The kit includes easily identifiable PAK1 PBD Agarose beads (see Figure 1), pink in color, along with Rac1 and Cdc42 Immunoblot Positive Controls for quick Rac1 or Cdc42 identification. Each kit provides sufficient quantities to perform 20 assays for each small GTPase. Figure 1:PAK RBD Agarose beads, in color, are easy to visualize, minimizing potential loss during washes and aspirations.

Components:

1. PAK1 PBD Agarose : Two vials - 2 x 800 μL of 50% slurry, 400 μg PBD in PBS containing 50% glycerol. Note: Agarose bead appears pink in color for easy identification, washing, and aspiration.
2. 100X GTPγS : Two vials - 2 x 50 μL of 10 mM GTPγS dissolved in sterile water.
3. 100X GDP : Two vials - 2 x 50 μL of 100 mM GDP dissolved in sterile water.
4. 5X Assay/Lysis Buffer : Two bottles - 2 x 30 mL of 125 mM HEPES, pH 7.5, 750 mM NaCl, 5% NP-40, 50 mM MgCl2, 5 mM EDTA, 10% Glycerol.
5. Anti-Rac1, Mouse Monoclonal : One vial - 40 μL in PBS, pH 7.4, 0.05% NaN3, 0.1% BSA. Note: This monoclonal antibody specifically reacts with human, mouse, and rat Rac1, Additional unknown higher MW proteins may be detected in some preparations.
6. Anti-Cdc42, Mouse Monoclonal : One vial - 40 μL in PBS, pH 7.4, 0.05% NaN3, 0.1% BSA.
7. Rac1 Immunoblot Positive Control : One vial - 100 μL of partially purified, recombinant Rac1 from E. coli (provided ready-to-use in 1X reducing SDS-PAGE Sample Buffer, pre-boiled).
8. Cdc42 Immunoblot Positive Control : One vial - 100 μL of partially purified, recombinant Cdc42 from E. coli (provided ready-to-use in 1X reducing SDS-PAGE Sample Buffer, pre-boiled).

Material not included:

1. Stimulated and non-stimulated cell lysates
2. Rac1 and/or Cdc42 activators
3. Protease inhibitors
4. 0.5 M EDTA in water
5. 1 M MgCl2 4
6. 30 °C incubator or water bath
7. 4 °C tube rocker or shaker
8. 2X reducing SDS-PAGE sample buffer
9. Electrophoresis and immunoblotting systems
10. Immunoblotting wash buffer such as TBST (10 mM Tris-HCl, pH 7.4, 0.15 M NaCl, 0.05 % Tween-20)
11. Immunoblotting blocking buffer (TBST containing 5 % Non-fat Dry Milk)
12. PVDF or nitrocellulose membrane
13. Secondary Antibody
14. ECL Detection Reagents

Application Details

Application Notes: Optimal working dilution should be determined by the investigator.

Comment:

• Safe non-radioactive assay format
• Colored agarose beads allow visual check
• Fast results: 1 hour plus electrophoresis/blotting time

Assay Time: 1 h

Reagent Preparation:

• 1X Assay/Lysis Buffer: Mix the 5X Stock briefly and dilute to 1X in deionized water. Just prior to usage, add protease inhibitors such as 1 mM PMSF, 10 μg/mL leupeptin, and 10 μg/mL aprotinin.

Sample Preparation:

Note: It is advisable to use fresh cell lysates because GTP-Rac1 or Cdc42 is quickly hydrolyzed to GDP-Rac1 or Cdc42, frozen lysates stored at -70 °C may be used. Performing steps at 4 °C or on ice may reduce hydrolysis. Avoid multiple freeze/thaw cycles of lysates.

I. Adherent Cells

1. Culture cells to approximately 80-90 % confluence. Stimulate cells with Rac1 or Cdc42 activator(s) as desired.
2. Aspirate the culture media and wash twice with ice-cold PBS.
3. Completely remove the final PBS wash and add ice-cold 1X Assay/Lysis Buffer to the cells (0.5 - 1 mL per 100 mm tissue culture plate).
4. Place the culture plates on ice for 10-20 minutes.
5. Detach the cells from the plates by scraping with a cell scraper.
6. Transfer the lysates to appropriate size tubes and place on ice.
7. If nuclear lysis occurs, the cell lysates may become very viscous and difficult to pipette. If this occurs, lysates can be passed through a 271/2-gauge syringe needle 3-4 times to shear the genomic DNA.
8. Clear the lysates by centrifugation for 10 minutes (14,000 x g at 4 °C).
9. Collect the supernatant and store samples on ice for immediate use, or snap freeze and store at - 70 °C for future use. 5
10. Proceed to GTPγS/GDP Loading for positive and negative controls, or Pull-Down Assay.

II. Suspension Cells

1. Culture cells and stimulate with Rac1 or Cdc42 activator(s) as desired.
2. Perform a cell count, and then pellet the cells by centrifugation.
3. Aspirate the culture media and wash twice with ice-cold PBS.
4. Completely remove the final PBS wash and add ice-cold 1X Assay/Lysis Buffer to the cell pellet (0.5 - 1 mL per 1 x 107 cells).
5. Lyse the cells by repeated pipetting.
6. Transfer the lysates to appropriate size tubes and place on ice.
7. If nuclear lysis occurs, the cell lysates may become very viscous and difficult to pipette. If this occurs, lysates can be passed through a 271/2-gauge syringe needle 3-4 times to shear the genomic DNA.
8. Clear the lysates by centrifugation for 10 minutes (14,000 x g at 4 °C).
9. Collect the supernatant and store samples on ice for immediate use, or snap freeze and store at - 70 °C for future use.
10. Proceed to GTPγS/GDP Loading for positive and negative controls, or Pull-Down Assay.

Assay Procedure:

Important Note: Before running any Small GTPase pulldown assay, it is always a good practice to run a Western Blot directly on the cell lysate using the antibody provided in this kit. For example: load 5 μg, 10 μg and 20 μg of lysate onto an SDS-PAGE gel, transfer and blot. When proceeding with the pulldown assay, use 100-times the amount of lysate that gave you a clear band of your desired small GTPase in the direct Western blot. For example: if the 5 μg band was faint but the 10 μg band was clear and strong, use 100 x 10 μg = 1 mg of lysate in the assay. Using sufficient lysate in the pulldown assay is critical to success.

I. GTPγS/GDP Loading (Positive and Negative Controls) Note: Samples that will not be GTPγS/GDP loaded may be kept on ice during the loading of controls.

1. Aliquot 0.5 - 1 mL of each cell lysate to two microcentrifuge tubes. Note: Typical protein content/sample is > 0.5 mg.
2. Adjust the volume of each sample to 1 mL with 1X Assay Lysis Buffer.
3. Add 20 μL of 0.5 M EDTA to each sample.
4. Add 10 μL of 100X GTPγS to one tube (positive control) and 10 μL of 100X GDP to the other tube (negative control). Mix and label each tube appropriately.
5. Incubate the tubes for 30 minutes at 30 °C with agitation.
6. Stop the loading by adding 65 μL of 1 M MgCl2 to each tube. Mix and place tubes on ice.
7. Continue with Pull-Down assay. 6

II. Rac1 or Cdc42 Pull-Down Assay

1. Aliquot 0.5 - 1 mL of cell lysate (treated with Rac1 or Cdc42 activators or untreated) to a microcentrifuge tube.
2. Adjust the volume of each sample to 1 mL with 1X Assay Lysis Buffer.
3. Thoroughly resuspend the PAK PBD Agarose bead slurry by vortexing or titurating.
4. Quickly add 40 μL of resuspended bead slurry to each tube (including GTPγS/GDP controls).
5. Incubate the tubes at 4 °C for 1 hour with gentle agitation.
6. Pellet the beads by centrifugation for 10 seconds at 14,000 x g.
7. Aspirate and discard the supernatant, making sure not to disturb/remove the bead pellet.
8. Wash the bead 3 times with 0.5 mL of 1X Assay Buffer, centrifuging and aspirating each time.
9. After the last wash, pellet the beads and carefully remove all the supernatant.
10. Resuspend the bead pellet in 40 μL of 2X reducing SDS-PAGE sample buffer.
11. Boil each sample for 5 minutes.
12. Centrifuge each sample for 10 seconds at 14,000 x g.

III. Electrophoresis and Transfer

1. Load 20 μL/well of pull-down supernatant to a polyacrylamide gel. Also, it's recommended to include a pre-stained MW standard (as an indicator of a successful transfer in step 3). Note: If desired, 10 μL/well of Rac1 or Cdc42 Immunoblot Positive Control (provided ready- to-use, pre-boiled) can be added as an immunoblot positive control.
2. Perform SDS-PAGE as per the manufacturer's instructions.
3. Transfer the gel proteins to a PVDF or nitrocellulose membrane as per the manufacturer's instructions.

IV. Immunoblotting and Detection (all steps are at room temperature, with agitation)

1. Following the electroblotting step, immerse the PVDF membrane in 100 % Methanol for 15 seconds, and then allow it to dry at room temperature for 5 minutes. Note: If Nitrocellulose is used instead of PVDF, this step should be skipped.
2. Block the membrane with 5 % non-fat dry milk in TBST for 1 hr at room temperature with constant agitation. Incubate the membrane with Anti-Rac1 or Cdc42 Antibody, freshly diluted 1:200 to 1:1000 in 5 % non-fat dry milk/TBST, for 1-2 hr at room temperature with constant agitation. Note: To conserve antibody, incubations should be performed in a plastic bag.
3. Wash the blotted membrane three times with TBST, 5 minutes each time. 7
4. Incubate the membrane with a secondary antibody (e.g. Goat Anti-Mouse IgG, HRP- conjugate), freshly diluted in 5 % non-fat dry milk/TBST, for 1 hr at room temperature with constant agitation.
5. Wash the blotted membrane three times with TBST, 5 minutes each time.
6. Use the detection method of your choice. We recommend enhanced chemiluminescence reagents from Pierce.

Restrictions: For Research Use only

Handling

Handling Advice: Avoid multiple freeze/thaw cycles.

Storage: -20 °C

Storage Comment: Store all kit components at -20°C. The 5X Assay/Lysis Buffer may be stored at either -20°C or 4°C. Avoid multiple freeze/thaw cycles.

References

Tanaka, Sanui, Fukuda, Toyoda, Taketomi, Atomura, Yamamichi, Maeda, Nishimura: "Sprouty2 inhibition promotes proliferation and migration of periodontal ligament cells." in: Oral diseases, Vol. 21, Issue 8, pp. 977-86, (2015) (PubMed).

Galic, Tsai, Collins, Matis, Bandara, Meyer: "Dynamic recruitment of the curvature-sensitive protein ArhGAP44 to nanoscale membrane deformations limits exploratory filopodia initiation in neurons." in: eLife, Vol. 3, pp. e03116, (2014) (PubMed).

Holmes, Annala, Chua, Dunlap, Liu, Hugen, Moore, Cogdell, Hu, Nykter, Hess, Fuller, Zhang: "Insulin-like growth factor-binding protein 2-driven glioma progression is prevented by blocking a clinically significant integrin, integrin-linked kinase, and NF-κB network." in: Proceedings of the National Academy of Sciences of the United States of America, Vol. 109, Issue 9, pp. 3475-80, (2012) (PubMed).

Chen, Wu, Pan, Huang: "Integrity of SOS1/EPS8/ABI1 tri-complex determines ovarian cancer metastasis." in: Cancer research, Vol. 70, Issue 23, pp. 9979-90, (2010) (PubMed).

Sultana, Neelakanta, Kantor, Malawista, Fish, Montgomery, Fikrig: "Anaplasma phagocytophilum induces actin phosphorylation to selectively regulate gene transcription in Ixodes scapularis ticks." in: The Journal of experimental medicine, Vol. 207, Issue 8, pp. 1727-43, (2010) (PubMed).

Pandey, Goyal, Dwivedi, Siess: "Unraveling a novel Rac1-mediated signaling pathway that regulates cofilin dephosphorylation and secretion in thrombin-stimulated platelets." in: Blood, Vol. 114, Issue 2, pp. 415-24, (2009) (PubMed).

Lorger, Moelling: "Regulation of epithelial wound closure and intercellular adhesion by interaction of AF6 with actin cytoskeleton." in: Journal of cell science, Vol. 119, Issue Pt 16, pp. 3385-98, (2006) (PubMed).

Target Details

Background: Small GTP-binding proteins (or GTPases) are a family of proteins that serve as molecular regulators in signaling transduction pathways. Rac1 and Cdc42, 21 kDa proteins, belong to the family of Rho GTPases regulates a variety of biological response pathways that include cell motility, cell division, gene transcription, and cell transformation. Like other small GTPases, Rac1 and Cdc42 regulate molecular events by cycling between an inactive GDP-bound form and an active GTP-bound form. In its active (GTP-bound) state, Rac1 or Cdc42 binds specifically to the p21-binding domain (PBD) of p21-activated protein kinase (PAK) to control downstream signaling cascades.