» Read a general FACS protocol What is flow cytometry (FACS analysis)? Flow cytometry (FACS analysis) is a method to evaluate cell membrane proteins and intracellular proteins as well as peptides and DNA. The principle behind FACS is an antigen-antibody reaction, with the antibodies being fluorescently labelled. Flow cytometry quantification is carried out with intercalating color labels (without the antibody). What is FACS? The acronym FACS (also often referred to as FACS analysis) stands for fluorescence activated cell sorting. The term FACS is actually a brand name of Becton Dickinson (BD), but has gained popularity as the household name for flow cytometry. Equipment and machinery for flow cytometry, however, are still being offered by various manufacturers under varying names. The basis of a FACS analysis is a labelled (colored) suspension of individual cells which passes a focused laser beam. Capillary forces cause the cells to pass the flowcell, where the labels are stimulated by the laser light. The emitted flurescent light from the fluorophores (coupled to the antibodies) and the scattered-light are detected separately. Light scattering The cells scatter a fraction of the light which is then detected by photomultipliers (light detectors). The amount of light measured correlates with the size of the cells and their complexity. Granulocytes, for example, reflect more light than smooth surfaced B- or T-cells, due to their rough surface texture and a larger amount of vesicles inside the cell. A measurement for the diffraction of light in a flat angle is the forward scatter (FSC), which depends on the volume of the cell. A measurement for the diffraction of light in a right angle is the so called sidewards scatter (SSC). It depends on the granularity, the size of the cells, the structure of its nucleus, and the amount of vesicles inside the cells. Blood cells, for example, can be distinguished just by looking at these two measurements (Fig. 1). Fig. 1. Characterization of unstained cells using light scatter (Dot Plot). On the upper right: large cells. On top: ganular cells. Large granular cells (e.g. granulocytes) can be found on the top right while small cells which are smooth can be found on the bottom left. Fluorescence measurements (flow cytometry analysis) Fluorescent colors can be measured concomittantly with the scattered light in flow cytometry. Only few cells produce fluorescent light endogenously. By using for instance the color substances DAPI and propidiumiodid which intercalate in a cell's DNA (between the base pairs), the amount of DNA in a cell can be measured by determining the brightness of the cell. Fluorescently labeled antibodies can also be used. Usually, the used antibodies target surface proteins (e.g. CD antigens; CD = Cluster of differentiation). The information density can be increased by using different colored laser light and filters. If the wavelengths of the emitted fluorescent light from the flurophores is distinguishable, several color markers can be used (multistaining). Fig. 2. Scheme of colored cells in a FACS measurement. The first image shows a positive CD80 and a negative CD14 cell. The antibody-coupled fluorochrome is being stimulated by laser light and emits fluorescent light of a certain wavelength (red). The light is being measured in flurescent channel 1. The second image shows a negative CD80 and positive CD14 cell. Channel two measures fluorochrome light of another wavelength (green). Using the equipment manufacturer's software, the end results of the measurements are presented graphically. The type of graphic can be chosen by the user. Most commonly Dot Plots and histograms are used. The above mentioned colorations could look something like this: DOT PLOT Fig. 3. Scheme of a Dot Plots for CD14 and CD80. Cells negative for both markers are on the bottom left. CD14-positive cells on the bottom right and CD80-positive cells on the top left. Cells positive for both markers are on the top right. The intensity of the fluorescence increases from left to right (x-axis) and from bottom to top (y-axis). Histogram Fig. 4. The two histograms present results of the surface markers CD14 (a) and CD80 (b) individually. The x-axis represents the intensity of the fluorescence, the y-axis the number of cells. The bar stands for the amount of positive cells. Hint: antibodies-online.com offers more than 54,000 antibodies for flow cytometry (FACS analysis).